Transcript: Human XM_011533005.2

PREDICTED: Homo sapiens baculoviral IAP repeat containing 6 (BIRC6), transcript variant X18, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BIRC6 (57448)
Length:
14395
CDS:
256..12225

Additional Resources:

NCBI RefSeq record:
XM_011533005.2
NBCI Gene record:
BIRC6 (57448)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011533005.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000369112 ATTGGATGGTTACGGTTATTA pLKO_005 10318 CDS 100% 15.000 21.000 N BIRC6 n/a
2 TRCN0000369113 TGGTAGTGGCAACTGATATAA pLKO_005 5801 CDS 100% 15.000 21.000 N BIRC6 n/a
3 TRCN0000364500 GGACGTTACGGGAGTACAAAT pLKO_005 5893 CDS 100% 13.200 18.480 N BIRC6 n/a
4 TRCN0000004158 GCGTTCTTTCTACAGTGCATT pLKO.1 11629 CDS 100% 4.950 6.930 N BIRC6 n/a
5 TRCN0000364502 CCGCCTCACCAGTCCATTATT pLKO_005 5626 CDS 100% 15.000 12.000 N BIRC6 n/a
6 TRCN0000004159 GCTGTAGTGAATGGTGCAAAT pLKO.1 2620 CDS 100% 10.800 7.560 N BIRC6 n/a
7 TRCN0000004161 GCTCATTTGTTGGTTTCAGAT pLKO.1 8581 CDS 100% 4.950 2.970 N BIRC6 n/a
8 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 11998 CDS 100% 4.950 2.475 Y LOC387873 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011533005.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.