Transcript: Human XM_011534750.3

PREDICTED: Homo sapiens XK related 5 (XKR5), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
XKR5 (389610)
Length:
3812
CDS:
1449..2699

Additional Resources:

NCBI RefSeq record:
XM_011534750.3
NBCI Gene record:
XKR5 (389610)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011534750.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157474 GATGAAGCAAGAGCCGAGTTT pLKO.1 2669 CDS 100% 4.950 6.930 N XKR5 n/a
2 TRCN0000157643 CTAAGTCACCATGCAGCTGTT pLKO.1 2544 CDS 100% 4.050 5.670 N XKR5 n/a
3 TRCN0000157437 GAGGACTCTTTCCTCAGTCAT pLKO.1 1824 CDS 100% 0.495 0.693 N XKR5 n/a
4 TRCN0000155865 CCTAAGTCTGAGTCTATCCAA pLKO.1 2625 CDS 100% 3.000 2.400 N XKR5 n/a
5 TRCN0000158089 CTTAGAGAACAGCTCTGCGTT pLKO.1 2030 CDS 100% 2.640 2.112 N XKR5 n/a
6 TRCN0000154763 GCAGTGTCTCACTGGTAATTT pLKO.1 1558 CDS 100% 15.000 10.500 N XKR5 n/a
7 TRCN0000154693 GAGATAACAGTCCTGCCTATT pLKO.1 1912 CDS 100% 10.800 7.560 N XKR5 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011534750.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.