Transcript: Human XM_011536075.2

PREDICTED: Homo sapiens solute carrier family 22 member 3 (SLC22A3), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC22A3 (6581)
Length:
10559
CDS:
6912..8126

Additional Resources:

NCBI RefSeq record:
XM_011536075.2
NBCI Gene record:
SLC22A3 (6581)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011536075.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415574 GGTATGGCAGGATCGTCATTT pLKO_005 6988 CDS 100% 13.200 18.480 N SLC22A3 n/a
2 TRCN0000038613 GCAGTGGTGTATCAAGGACTT pLKO.1 7539 CDS 100% 4.050 3.240 N SLC22A3 n/a
3 TRCN0000038610 CCCAACAACATTACGAAATTT pLKO.1 7838 CDS 100% 15.000 10.500 N SLC22A3 n/a
4 TRCN0000435593 TTTACCCTTGGAATCATAATT pLKO_005 7203 CDS 100% 15.000 10.500 N SLC22A3 n/a
5 TRCN0000433187 CGCTTCCTGCAAGGTGTATTT pLKO_005 7089 CDS 100% 13.200 9.240 N SLC22A3 n/a
6 TRCN0000038612 CCTGTAAATGTGGCAGGAATA pLKO.1 8074 CDS 100% 10.800 7.560 N SLC22A3 n/a
7 TRCN0000414529 GGATTGTGGGAATCGTGATTC pLKO_005 7174 CDS 100% 10.800 7.560 N SLC22A3 n/a
8 TRCN0000038611 CCCTGGAATTGCCTACTTCAT pLKO.1 7226 CDS 100% 4.950 3.465 N SLC22A3 n/a
9 TRCN0000070196 CTCATCAAATTACTCAGAGAT pLKO.1 7412 CDS 100% 4.950 3.465 N Slc22a3 n/a
10 TRCN0000038609 GCACCAAACTTCCCTGTGTTT pLKO.1 7059 CDS 100% 4.950 3.465 N SLC22A3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011536075.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.