Transcript: Human XM_011536102.2

PREDICTED: Homo sapiens utrophin (UTRN), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UTRN (7402)
Length:
12651
CDS:
205..10614

Additional Resources:

NCBI RefSeq record:
XM_011536102.2
NBCI Gene record:
UTRN (7402)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011536102.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303379 AGCCGACTGGCTGGTATTAAT pLKO_005 7026 CDS 100% 15.000 21.000 N UTRN n/a
2 TRCN0000303321 CTCATCGTACTTCGGAAATTT pLKO_005 6968 CDS 100% 15.000 21.000 N UTRN n/a
3 TRCN0000303320 TCACCGCCAGAGTCGATTATA pLKO_005 10201 CDS 100% 15.000 21.000 N UTRN n/a
4 TRCN0000303381 TATGTTTATCAGCCATATAAC pLKO_005 11112 3UTR 100% 13.200 18.480 N UTRN n/a
5 TRCN0000054287 CCGACATAAACCTGATCTCTT pLKO.1 882 CDS 100% 4.950 6.930 N UTRN n/a
6 TRCN0000054284 CCTGACAAGAAATCCATAATT pLKO.1 1024 CDS 100% 15.000 10.500 N UTRN n/a
7 TRCN0000054285 CCCTATTACATCAACCATCAA pLKO.1 8794 CDS 100% 4.950 3.465 N UTRN n/a
8 TRCN0000054286 CCTGCAAGAATTAAGAGACTT pLKO.1 6666 CDS 100% 4.950 3.465 N UTRN n/a
9 TRCN0000054283 GCCCAGATTGAGGAAGTTCTA pLKO.1 5731 CDS 100% 4.950 3.465 N UTRN n/a
10 TRCN0000292035 GCCCAGATTGAGGAAGTTCTA pLKO_005 5731 CDS 100% 4.950 3.465 N UTRN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011536102.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.