Transcript: Human XM_011536456.2

PREDICTED: Homo sapiens proline rich membrane anchor 1 (PRIMA1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PRIMA1 (145270)
Length:
4104
CDS:
497..958

Additional Resources:

NCBI RefSeq record:
XM_011536456.2
NBCI Gene record:
PRIMA1 (145270)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011536456.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000154190 CAAAGGAGTAGACGTGAACAA pLKO.1 925 CDS 100% 4.950 6.930 N PRIMA1 n/a
2 TRCN0000156923 GCAACAAAGGAGTAGACGTGA pLKO.1 921 CDS 100% 2.640 3.696 N PRIMA1 n/a
3 TRCN0000124745 CATTTGCTACAAAGCCATAAA pLKO.1 832 CDS 100% 13.200 10.560 N Prima1 n/a
4 TRCN0000153698 CTGACTGTGCTTGTCATCATT pLKO.1 815 CDS 100% 5.625 3.938 N PRIMA1 n/a
5 TRCN0000157204 GAGCTTGTCCAGGACTTCATT pLKO.1 1045 3UTR 100% 5.625 3.938 N PRIMA1 n/a
6 TRCN0000154142 CGAAGGAGAAACCATTGTCTT pLKO.1 1088 3UTR 100% 4.950 3.465 N PRIMA1 n/a
7 TRCN0000150493 GCTTGTCATCATTTGCTACAA pLKO.1 823 CDS 100% 4.950 3.465 N PRIMA1 n/a
8 TRCN0000157379 CCGAAGGAGAAACCATTGTCT pLKO.1 1087 3UTR 100% 3.000 2.100 N PRIMA1 n/a
9 TRCN0000157402 GTTGCTGAGTATCCCATGAGT pLKO.1 890 CDS 100% 3.000 2.100 N PRIMA1 n/a
10 TRCN0000156629 GAGCAACAAAGGAGTAGACGT pLKO.1 919 CDS 100% 2.640 1.848 N PRIMA1 n/a
11 TRCN0000157170 GCAGAGCAACAAAGGAGTAGA pLKO.1 916 CDS 100% 4.950 2.970 N PRIMA1 n/a
12 TRCN0000157783 CTGGTGATCATCATTGCCGTA pLKO.1 773 CDS 100% 2.160 1.296 N PRIMA1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011536456.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.