Transcript: Human XM_011537805.2

PREDICTED: Homo sapiens bromodomain adjacent to zinc finger domain 2A (BAZ2A), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BAZ2A (11176)
Length:
6692
CDS:
296..6028

Additional Resources:

NCBI RefSeq record:
XM_011537805.2
NBCI Gene record:
BAZ2A (11176)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011537805.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000367865 TACTGGGTATTGCCGTATTTG pLKO_005 3662 CDS 100% 13.200 18.480 N BAZ2A n/a
2 TRCN0000015572 GCCGTATTTGGCTGGTATCTT pLKO.1 3673 CDS 100% 5.625 7.875 N BAZ2A n/a
3 TRCN0000015571 CCAAGTCATAACACTAACCTT pLKO.1 695 CDS 100% 3.000 4.200 N BAZ2A n/a
4 TRCN0000015568 CGGCCAGTAAAGTGGACTTAA pLKO.1 6475 3UTR 100% 13.200 10.560 N BAZ2A n/a
5 TRCN0000358513 TATGCAACCTAGGCATCTTAA pLKO_005 3886 CDS 100% 13.200 9.240 N BAZ2A n/a
6 TRCN0000015569 GCCAGAAATAAGCGGAAACAA pLKO.1 2489 CDS 100% 5.625 3.938 N BAZ2A n/a
7 TRCN0000015570 CCTGCCTTTCAAGAAGGGATT pLKO.1 4772 CDS 100% 4.050 2.835 N BAZ2A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011537805.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.