Transcript: Human XM_011538023.2

PREDICTED: Homo sapiens phospholipase B domain containing 2 (PLBD2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PLBD2 (196463)
Length:
4544
CDS:
194..1588

Additional Resources:

NCBI RefSeq record:
XM_011538023.2
NBCI Gene record:
PLBD2 (196463)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011538023.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413389 TCGAGTATGAAGTCGGCTACT pLKO_005 252 CDS 100% 4.050 5.670 N PLBD2 n/a
2 TRCN0000005051 CACGTATAACAACCAGTGGAT pLKO.1 934 CDS 100% 2.640 3.696 N PLBD2 n/a
3 TRCN0000432061 TCTTCTGCCCTGCCCTAAATC pLKO_005 1802 3UTR 100% 13.200 9.240 N PLBD2 n/a
4 TRCN0000005049 CCTTGAGGACAGAAACTTGAA pLKO.1 2125 3UTR 100% 4.950 3.465 N PLBD2 n/a
5 TRCN0000005053 GCTGATGAGGTACAATGACTT pLKO.1 1249 CDS 100% 4.950 3.465 N PLBD2 n/a
6 TRCN0000005052 GCTGCGTGTCATCAAGAAGTA pLKO.1 628 CDS 100% 4.950 3.465 N PLBD2 n/a
7 TRCN0000005050 GCAGGAAGAGATGGAGTCAAA pLKO.1 316 CDS 100% 4.950 2.970 N PLBD2 n/a
8 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 2818 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
9 TRCN0000165534 GAGACAGGGTTTCACCATGTT pLKO.1 2852 3UTR 100% 4.950 2.475 Y n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011538023.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.