Transcript: Human XM_011539117.2

PREDICTED: Homo sapiens ADAM metallopeptidase domain 8 (ADAM8), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ADAM8 (101)
Length:
3398
CDS:
73..2664

Additional Resources:

NCBI RefSeq record:
XM_011539117.2
NBCI Gene record:
ADAM8 (101)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011539117.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000433364 GTGTTCAGGAGGCCACATATA pLKO_005 2970 3UTR 100% 13.200 18.480 N ADAM8 n/a
2 TRCN0000006669 CGTGGACAAGCTATATCAGAA pLKO.1 963 CDS 100% 4.950 6.930 N ADAM8 n/a
3 TRCN0000006671 GCATGACAACGTACAGCTCAT pLKO.1 1119 CDS 100% 4.050 3.240 N ADAM8 n/a
4 TRCN0000006670 CCGGCTACACAGAGACCTATA pLKO.1 509 CDS 100% 10.800 7.560 N ADAM8 n/a
5 TRCN0000422202 GCATCATCGTCTACCGCAAAG pLKO_005 2288 CDS 100% 6.000 4.200 N ADAM8 n/a
6 TRCN0000006668 CCAGAGAAGGTTTGCTGGAAA pLKO.1 2044 CDS 100% 4.950 3.465 N ADAM8 n/a
7 TRCN0000006667 GCTGCTGTTCTAACCTCAGTA pLKO.1 2782 3UTR 100% 4.950 3.465 N ADAM8 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011539117.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.