Transcript: Human XM_011540536.3

PREDICTED: Homo sapiens mannosidase alpha class 1A member 2 (MAN1A2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MAN1A2 (10905)
Length:
6249
CDS:
792..2588

Additional Resources:

NCBI RefSeq record:
XM_011540536.3
NBCI Gene record:
MAN1A2 (10905)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011540536.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000359349 AGGCCTACTTGCAGCATATTA pLKO_005 1610 CDS 100% 15.000 10.500 N MAN1A2 n/a
2 TRCN0000359280 TGAAGTCAACATTCGATTTAT pLKO_005 1586 CDS 100% 15.000 10.500 N MAN1A2 n/a
3 TRCN0000049632 GCAGATAAAGCTGGTCATTAT pLKO.1 2220 CDS 100% 13.200 9.240 N MAN1A2 n/a
4 TRCN0000049629 GCATGGTTGATGTCAGATAAA pLKO.1 2013 CDS 100% 13.200 9.240 N MAN1A2 n/a
5 TRCN0000077084 CCAGAAGTAATTGAAACCTAT pLKO.1 2385 CDS 100% 4.950 3.465 N Man1a2 n/a
6 TRCN0000302851 CCAGAAGTAATTGAAACCTAT pLKO_005 2385 CDS 100% 4.950 3.465 N Man1a2 n/a
7 TRCN0000049630 CCATAGTAGATGCTTTGGATA pLKO.1 1468 CDS 100% 4.950 3.465 N MAN1A2 n/a
8 TRCN0000049628 GCAGAAATTCAGACAGAGAAA pLKO.1 1194 CDS 100% 4.950 2.970 N MAN1A2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011540536.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.