Transcript: Human XM_011541886.3

PREDICTED: Homo sapiens HIVEP zinc finger 3 (HIVEP3), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HIVEP3 (59269)
Length:
7212
CDS:
1493..6802

Additional Resources:

NCBI RefSeq record:
XM_011541886.3
NBCI Gene record:
HIVEP3 (59269)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011541886.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000236165 CAAGAAGGTACGGACTCAAAG pLKO_005 6242 CDS 100% 10.800 15.120 N HIVEP3 n/a
2 TRCN0000236164 GGTTCCTGAGATCCTAGTAAC pLKO_005 4054 CDS 100% 10.800 15.120 N HIVEP3 n/a
3 TRCN0000018900 CGCTGGTTGGTGCATAAGTTT pLKO.1 6373 CDS 100% 5.625 7.875 N HIVEP3 n/a
4 TRCN0000244408 AGTACTGAGTCTGGGTATTTC pLKO_005 2654 CDS 100% 13.200 9.240 N HIVEP3 n/a
5 TRCN0000244409 GCCACAGCAGTCACGTGTTTA pLKO_005 3213 CDS 100% 13.200 9.240 N HIVEP3 n/a
6 TRCN0000018901 GCCTTGAACTTACCATGGAAA pLKO.1 5802 CDS 100% 4.950 3.465 N HIVEP3 n/a
7 TRCN0000018904 CCCTCATCAGTTCTTAGGGAA pLKO.1 1676 CDS 100% 2.640 1.848 N HIVEP3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011541886.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.