Transcript: Human XM_011541891.3

PREDICTED: Homo sapiens Rh blood group CcEe antigens (RHCE), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RHCE (6006)
Length:
3325
CDS:
372..1457

Additional Resources:

NCBI RefSeq record:
XM_011541891.3
NBCI Gene record:
RHCE (6006)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011541891.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427892 ATACTGTCTGGAACGGCAATG pLKO_005 1252 CDS 100% 6.000 8.400 N RHCE n/a
2 TRCN0000433664 CATTAGGATGATGCTATCAAT pLKO_005 1669 3UTR 100% 5.625 3.938 N RHCE n/a
3 TRCN0000060060 GCACCTCATGTGGCTAAATAT pLKO.1 1386 CDS 100% 15.000 9.000 N RHCE n/a
4 TRCN0000060058 GCCATGTTCAACACCTACTAT pLKO.1 912 CDS 100% 5.625 3.375 N RHCE n/a
5 TRCN0000060062 GCTTGGAGAGATCACCTACAT pLKO.1 1214 CDS 100% 4.950 2.970 N RHCE n/a
6 TRCN0000082942 CTGACAGGTTTGCTCCTAAAT pLKO.1 1350 CDS 100% 13.200 6.600 Y RHD n/a
7 TRCN0000060061 CCTGACAGGTTTGCTCCTAAA pLKO.1 1349 CDS 100% 10.800 5.400 Y RHCE n/a
8 TRCN0000082938 CCTGCATTTGTACGTGAGAAA pLKO.1 1519 3UTR 100% 4.950 2.475 Y RHD n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011541891.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.