Transcript: Human XM_011543392.3

PREDICTED: Homo sapiens arylsulfatase B (ARSB), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ARSB (411)
Length:
6113
CDS:
72..1289

Additional Resources:

NCBI RefSeq record:
XM_011543392.3
NBCI Gene record:
ARSB (411)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011543392.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000029375 CCGAGGATTTGATACCTACTT pLKO.1 548 CDS 100% 4.950 6.930 N ARSB n/a
2 TRCN0000292250 CCGAGGATTTGATACCTACTT pLKO_005 548 CDS 100% 4.950 6.930 N ARSB n/a
3 TRCN0000029378 GCTGCATAATATTGACCCGAA pLKO.1 1244 CDS 100% 2.160 3.024 N ARSB n/a
4 TRCN0000029376 GCTGTGTTCCTCTGGATGAAA pLKO.1 430 CDS 100% 5.625 3.938 N ARSB n/a
5 TRCN0000292249 GCTGTGTTCCTCTGGATGAAA pLKO_005 430 CDS 100% 5.625 3.938 N ARSB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011543392.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.