Transcript: Human XM_011543495.2

PREDICTED: Homo sapiens DEAD-box helicase 4 (DDX4), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DDX4 (54514)
Length:
2818
CDS:
123..2219

Additional Resources:

NCBI RefSeq record:
XM_011543495.2
NBCI Gene record:
DDX4 (54514)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011543495.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000051154 GCTCGTTGAAATTCTGCGAAA pLKO.1 1634 CDS 100% 4.050 5.670 N DDX4 n/a
2 TRCN0000051155 GCACATTATCAGACAGGCATA pLKO.1 822 CDS 100% 4.050 3.240 N DDX4 n/a
3 TRCN0000051157 CCTTCTACCATTGATGAATAT pLKO.1 1896 CDS 100% 13.200 9.240 N DDX4 n/a
4 TRCN0000051156 GCAGGTTTGAAGATGGTGATA pLKO.1 340 CDS 100% 4.950 3.465 N DDX4 n/a
5 TRCN0000103711 GCCCAGTTCTTGTTGCTACTT pLKO.1 1816 CDS 100% 4.950 3.465 N Ddx4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011543495.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.