Transcript: Human XM_011544192.3

PREDICTED: Homo sapiens tripartite motif containing 67 (TRIM67), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRIM67 (440730)
Length:
9041
CDS:
580..2925

Additional Resources:

NCBI RefSeq record:
XM_011544192.3
NBCI Gene record:
TRIM67 (440730)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011544192.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000150956 GATGCTTTAACTCGTCAGAAA pLKO.1 1774 CDS 100% 4.950 6.930 N TRIM67 n/a
2 TRCN0000154647 GCTGTGGATGTTCCACTGAAA pLKO.1 8814 3UTR 100% 4.950 6.930 N TRIM67 n/a
3 TRCN0000150570 GCCTTCTTTGTTACCTAAGTT pLKO.1 7939 3UTR 100% 5.625 3.938 N TRIM67 n/a
4 TRCN0000150770 GCCTTAAATGGAGTTTCAGAT pLKO.1 1639 CDS 100% 4.950 3.465 N TRIM67 n/a
5 TRCN0000150728 GCTAAAGAACATATTGCAGCA pLKO.1 1692 CDS 100% 2.160 1.512 N TRIM67 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011544192.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.