Transcript: Human XM_011545606.2

PREDICTED: Homo sapiens RALBP1 associated Eps domain containing 2 (REPS2), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
REPS2 (9185)
Length:
2419
CDS:
136..1944

Additional Resources:

NCBI RefSeq record:
XM_011545606.2
NBCI Gene record:
REPS2 (9185)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011545606.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423057 GGTACGGATAGAGAGTATTAA pLKO_005 507 CDS 100% 15.000 21.000 N REPS2 n/a
2 TRCN0000428939 ATGATGGTGAGATACGATTTG pLKO_005 566 CDS 100% 10.800 15.120 N REPS2 n/a
3 TRCN0000056210 CCATTCCAGAACTCTCCTATA pLKO.1 1082 CDS 100% 10.800 7.560 N REPS2 n/a
4 TRCN0000056208 GCTACCAAGTCAGGATTGTTA pLKO.1 1468 CDS 100% 5.625 3.938 N REPS2 n/a
5 TRCN0000056212 CCCTGGAGGATAACAGAAGAA pLKO.1 958 CDS 100% 4.950 3.465 N REPS2 n/a
6 TRCN0000201542 CGGATGGAGAAGACATCTGTT pLKO.1 1336 CDS 100% 4.950 3.465 N Reps2 n/a
7 TRCN0000056209 GCATGGAACTAAGGTTCAGAT pLKO.1 603 CDS 100% 4.950 3.465 N REPS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011545606.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.