Transcript: Human XM_011545653.1

PREDICTED: Homo sapiens vesicle associated membrane protein 7 (VAMP7), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
VAMP7 (6845)
Length:
2570
CDS:
299..940

Additional Resources:

NCBI RefSeq record:
XM_011545653.1
NBCI Gene record:
VAMP7 (6845)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011545653.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000298637 TCTTATGAGCTATCTACTAAA pLKO_005 1072 3UTR 100% 13.200 18.480 N VAMP7 n/a
2 TRCN0000379681 AGAATAAGGGCCTAGACAAAG pLKO_005 513 CDS 100% 10.800 15.120 N VAMP7 n/a
3 TRCN0000379810 ATGAGAGAACAAGGAGTTAAA pLKO_005 782 CDS 100% 13.200 9.240 N VAMP7 n/a
4 TRCN0000293927 TTGTATCACTGATGATGATTT pLKO_005 346 CDS 100% 13.200 9.240 N VAMP7 n/a
5 TRCN0000298636 GCGAGTTCTCAAGTGTCTTAG pLKO_005 468 CDS 100% 10.800 7.560 N VAMP7 n/a
6 TRCN0000293928 GGAAAGAAGAAGTTACCATTA pLKO_005 752 CDS 100% 10.800 7.560 N VAMP7 n/a
7 TRCN0000336014 TTTGTATCACTGATGATGATT pLKO_005 345 CDS 100% 5.625 3.938 N Vamp7 n/a
8 TRCN0000059889 GCTCACTATTATCATCATCAT pLKO.1 653 CDS 100% 4.950 3.465 N VAMP7 n/a
9 TRCN0000115069 TCGAGCCATGTGTATGAAGAA pLKO.1 626 CDS 100% 4.950 3.465 N Vamp7 n/a
10 TRCN0000059891 GCACTTCCATATGCCATGAAT pLKO.1 446 CDS 100% 0.000 0.000 N VAMP7 n/a
11 TRCN0000059890 GAGCAGATTCTGGCTAAGATA pLKO.1 224 5UTR 100% 5.625 3.375 N VAMP7 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011545653.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.