Transcript: Human XM_017000763.2

PREDICTED: Homo sapiens regulation of nuclear pre-mRNA domain containing 2 (RPRD2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RPRD2 (23248)
Length:
4908
CDS:
568..4674

Additional Resources:

NCBI RefSeq record:
XM_017000763.2
NBCI Gene record:
RPRD2 (23248)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017000763.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000338903 CCGAGTAAGAATGATTCATTT pLKO_005 3079 CDS 100% 13.200 18.480 N RPRD2 n/a
2 TRCN0000338838 TTTCGATCTCAGGCCCTAATT pLKO_005 1051 CDS 100% 13.200 18.480 N RPRD2 n/a
3 TRCN0000141116 CCTGCTTAGACTTGCCTGATA pLKO.1 3497 CDS 100% 4.950 6.930 N RPRD2 n/a
4 TRCN0000143930 CCAACAGTTTCAACTCAACAT pLKO.1 3836 CDS 100% 4.950 3.960 N RPRD2 n/a
5 TRCN0000122025 GAAGTAGGAGTTTGGTTTATT pLKO.1 4719 3UTR 100% 15.000 10.500 N RPRD2 n/a
6 TRCN0000338902 GAAGTAGGAGTTTGGTTTATT pLKO_005 4719 3UTR 100% 15.000 10.500 N RPRD2 n/a
7 TRCN0000141869 GCTTTGCCAAACCTGGCTAAT pLKO.1 1819 CDS 100% 10.800 7.560 N RPRD2 n/a
8 TRCN0000143089 CGCTCAGAAGATCAGATAGAA pLKO.1 1093 CDS 100% 5.625 3.938 N RPRD2 n/a
9 TRCN0000122133 GCTGCTCTCAAGTCTAAGATA pLKO.1 1021 CDS 100% 5.625 3.938 N RPRD2 n/a
10 TRCN0000338900 GCTGCTCTCAAGTCTAAGATA pLKO_005 1021 CDS 100% 5.625 3.938 N RPRD2 n/a
11 TRCN0000141619 CCAGCCAATTCTGTCCAGTTA pLKO.1 2895 CDS 100% 4.950 3.465 N RPRD2 n/a
12 TRCN0000144729 GAACATTGGAAGTAGGAGTTT pLKO.1 4711 3UTR 100% 4.950 3.465 N RPRD2 n/a
13 TRCN0000338901 GAACATTGGAAGTAGGAGTTT pLKO_005 4711 3UTR 100% 4.950 3.465 N RPRD2 n/a
14 TRCN0000143134 CCTGTGACAGATAATCGTGAT pLKO.1 1570 CDS 100% 4.050 2.835 N RPRD2 n/a
15 TRCN0000142053 GCAGTATTTCCCAAGGACCAT pLKO.1 4252 CDS 100% 2.640 1.848 N RPRD2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017000763.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.