Transcript: Human XM_017001257.1

PREDICTED: Homo sapiens immunoglobulin like domain containing receptor 2 (ILDR2), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ILDR2 (387597)
Length:
1672
CDS:
184..1518

Additional Resources:

NCBI RefSeq record:
XM_017001257.1
NBCI Gene record:
ILDR2 (387597)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017001257.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000159384 GCGGACTCTATTACTGTATTA pLKO.1 647 CDS 100% 13.200 18.480 N ILDR2 n/a
2 TRCN0000417154 AGCAATTTCCGCCAGTCTTTC pLKO_005 1267 CDS 100% 10.800 8.640 N ILDR2 n/a
3 TRCN0000159285 GCAGATATAACAACACCATCT pLKO.1 1217 CDS 100% 4.050 3.240 N ILDR2 n/a
4 TRCN0000426260 ATGAAGGTCCTGTACTATGTT pLKO_005 1153 CDS 100% 5.625 3.938 N ILDR2 n/a
5 TRCN0000166337 CTACATGAGGAGGACAGCAAT pLKO.1 1252 CDS 100% 4.950 3.465 N ILDR2 n/a
6 TRCN0000166072 GCAGTGGAAGTTCAAGTCCTA pLKO.1 390 CDS 100% 2.640 1.848 N ILDR2 n/a
7 TRCN0000165738 CTCAGCAAGAGAAACCTGGAA pLKO.1 466 CDS 100% 2.640 1.584 N ILDR2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017001257.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.