Transcript: Human XM_017001874.1

PREDICTED: Homo sapiens prostaglandin F2 receptor inhibitor (PTGFRN), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PTGFRN (5738)
Length:
6083
CDS:
35..2692

Additional Resources:

NCBI RefSeq record:
XM_017001874.1
NBCI Gene record:
PTGFRN (5738)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017001874.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000057448 GCCTTTGATGTGTCCTGGTTT pLKO.1 2228 CDS 100% 4.950 6.930 N PTGFRN n/a
2 TRCN0000057449 CGCTCCTACCATTTACTGGTT pLKO.1 1112 CDS 100% 2.640 2.112 N PTGFRN n/a
3 TRCN0000057451 GCATTAGAAGATTCCGTGCTT pLKO.1 1682 CDS 100% 2.640 2.112 N PTGFRN n/a
4 TRCN0000057450 CCAGGACTTTGGCAACTACTA pLKO.1 2407 CDS 100% 4.950 3.465 N PTGFRN n/a
5 TRCN0000057452 CCTATTGAGATAGACTTCCAA pLKO.1 2084 CDS 100% 3.000 2.100 N PTGFRN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017001874.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.