Transcript: Human XM_017002744.2

PREDICTED: Homo sapiens far upstream element binding protein 1 (FUBP1), transcript variant X21, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FUBP1 (8880)
Length:
6769
CDS:
127..2058

Additional Resources:

NCBI RefSeq record:
XM_017002744.2
NBCI Gene record:
FUBP1 (8880)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017002744.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000013295 GCTGAGTATTATAGACAACAA pLKO.1 1969 CDS 100% 4.950 6.930 N FUBP1 n/a
2 TRCN0000013297 CCTTTAGAAGATGGAGATCAA pLKO.1 322 CDS 100% 4.950 6.435 N FUBP1 n/a
3 TRCN0000230197 ACTACTGATAGGAGGTTAATA pLKO_005 2221 3UTR 100% 15.000 10.500 N FUBP1 n/a
4 TRCN0000230196 CAGCACCTCAGGGCCAATAAT pLKO_005 2039 CDS 100% 15.000 10.500 N FUBP1 n/a
5 TRCN0000257143 GCTTATTACGCTCACTATTAT pLKO_005 1738 CDS 100% 15.000 10.500 N FUBP1 n/a
6 TRCN0000230195 TACAACCCTGCACCTTATAAT pLKO_005 1573 CDS 100% 15.000 10.500 N FUBP1 n/a
7 TRCN0000013296 CCCGAAAGGATAGCACAAATA pLKO.1 1078 CDS 100% 13.200 9.240 N FUBP1 n/a
8 TRCN0000013293 CGACTTGATGAAGATCTTAAT pLKO.1 2132 3UTR 100% 13.200 9.240 N FUBP1 n/a
9 TRCN0000013294 GCTGCTTATTACGCTCACTAT pLKO.1 1735 CDS 100% 4.950 3.465 N FUBP1 n/a
10 TRCN0000096799 CCAATAATAAGAAGTGGACAA pLKO.1 2052 CDS 100% 4.050 2.835 N Fubp1 n/a
11 TRCN0000218854 GATTACAGGAGACCCATATAA pLKO_005 831 CDS 100% 15.000 9.000 N FUBP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017002744.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.