Transcript: Human XM_017003813.2

PREDICTED: Homo sapiens serine/threonine kinase 39 (STK39), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
STK39 (27347)
Length:
5724
CDS:
107..1714

Additional Resources:

NCBI RefSeq record:
XM_017003813.2
NBCI Gene record:
STK39 (27347)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

Clone ID Target Seq Vector PAM Seq Cut Position Cut % of CDS Length Exon On Target Score[?] Other Matching Genes Orig. Target Gene[?] Notes Addgene[?]
1 BRDN0001146271 GGTGTAATAGGTCACTACGT pXPR_003 TGG 361 22% 3 0.9656 STK39 STK39 76070
2 BRDN0001148139 AGTGCGTTCCTAGCAACAGG pXPR_003 GGG 656 41% 6 0.6095 STK39 STK39 76073
3 BRDN0001147207 AAGAACGTGTAGCAATAAAA pXPR_003 CGG 273 17% 2 0.0857 STK39 STK39 76072
4 BRDN0001145870 ATAAAATACATTGTCAACCG pXPR_003 AGG 464 29% 4 -0.0584 STK39 STK39 76071
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shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017003813.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000001006 CGGTCAGATTCACAGGGATTT pLKO.1 664 CDS 100% 10.800 15.120 N STK39 n/a
2 TRCN0000025153 GTAGTTATAGTGGCTGCTAAT pLKO.1 1595 CDS 100% 10.800 15.120 N Stk39 n/a
3 TRCN0000196547 GTACGGCAAGTCCTTTAGAAA pLKO.1 1021 CDS 100% 5.625 7.875 N STK39 n/a
4 TRCN0000194826 CCAGTATGGATGAACTATTAA pLKO.1 408 CDS 100% 15.000 10.500 N STK39 n/a
5 TRCN0000195440 CCCAACGTAGTGACCTATTAC pLKO.1 461 CDS 100% 13.200 9.240 N STK39 n/a
6 TRCN0000001007 AGAGGCAATAATAGCAACAAT pLKO.1 601 CDS 100% 5.625 3.938 N STK39 n/a
7 TRCN0000001008 CTACACAGAAACGGTCAGATT pLKO.1 653 CDS 100% 4.950 3.465 N STK39 n/a
8 TRCN0000195205 CTTAATGACATACGATTTGAG pLKO.1 1499 CDS 100% 4.950 3.465 N STK39 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017003813.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.