Transcript: Human XM_017004815.1

PREDICTED: Homo sapiens tensin 1 (TNS1), transcript variant X22, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TNS1 (7145)
Length:
9218
CDS:
490..4548

Additional Resources:

NCBI RefSeq record:
XM_017004815.1
NBCI Gene record:
TNS1 (7145)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017004815.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000002956 GCCTTTATCCACTCGAATTAT pLKO.1 5168 3UTR 100% 15.000 21.000 N TNS1 n/a
2 TRCN0000230832 GCCTTTATCCACTCGAATTAT pLKO_005 5168 3UTR 100% 15.000 21.000 N TNS1 n/a
3 TRCN0000355750 CAGTCCAGATCTGGCTATATC pLKO_005 1402 CDS 100% 13.200 10.560 N TNS1 n/a
4 TRCN0000355748 CCTCCTTGGGAATCCACATTT pLKO_005 4889 3UTR 100% 13.200 9.240 N TNS1 n/a
5 TRCN0000355749 TGTGGCCTATGGTGGCTATTC pLKO_005 3300 CDS 100% 10.800 7.560 N TNS1 n/a
6 TRCN0000002952 GCCACCATCGTTCACTTCAAA pLKO.1 4240 CDS 100% 5.625 3.938 N TNS1 n/a
7 TRCN0000230831 CCATGGAGCCTATGGTCAATG pLKO_005 767 CDS 100% 10.800 6.480 N TNS1 n/a
8 TRCN0000002955 CCGACTACTCACTTCAGCATT pLKO.1 2780 CDS 100% 4.950 2.970 N TNS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017004815.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.