Transcript: Human XM_017006719.2

PREDICTED: Homo sapiens anoctamin 10 (ANO10), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANO10 (55129)
Length:
2587
CDS:
115..2016

Additional Resources:

NCBI RefSeq record:
XM_017006719.2
NBCI Gene record:
ANO10 (55129)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017006719.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000454987 CAAGAGACAGTTGCGCATTTA pLKO_005 840 CDS 100% 13.200 18.480 N ANO10 n/a
2 TRCN0000416701 ATGAATCGTCTCTATCGATAT pLKO_005 1033 CDS 100% 10.800 15.120 N ANO10 n/a
3 TRCN0000141592 CCACGGCATATCCAGATGAAA pLKO.1 1882 CDS 100% 5.625 7.875 N ANO10 n/a
4 TRCN0000122752 CCCAATGCTTAGCCAAACGAA pLKO.1 2125 3UTR 100% 3.000 4.200 N ANO10 n/a
5 TRCN0000428199 ATGGTGTCTTGGGTATCAATT pLKO_005 782 CDS 100% 13.200 9.240 N ANO10 n/a
6 TRCN0000145352 GCAGACATTGATGCTACATTA pLKO.1 1330 CDS 100% 13.200 9.240 N ANO10 n/a
7 TRCN0000417218 TCACTAACTGTGCGCTGATTG pLKO_005 1736 CDS 100% 10.800 7.560 N ANO10 n/a
8 TRCN0000142106 GAACCTGAAGGAGGAACCAAT pLKO.1 1968 CDS 100% 4.950 3.465 N ANO10 n/a
9 TRCN0000122548 CAGACCCAATGCTTAGCCAAA pLKO.1 2121 3UTR 100% 4.050 2.835 N ANO10 n/a
10 TRCN0000415319 TCACACCTTTGGTGGTCATAG pLKO_005 158 CDS 100% 10.800 6.480 N ANO10 n/a
11 TRCN0000145582 CCTTTGATGATTACTTGGAGT pLKO.1 1397 CDS 100% 2.640 1.584 N ANO10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017006719.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.