Transcript: Human XM_017007978.1

PREDICTED: Homo sapiens cilia and flagella associated protein 299 (CFAP299), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CFAP299 (255119)
Length:
912
CDS:
307..768

Additional Resources:

NCBI RefSeq record:
XM_017007978.1
NBCI Gene record:
CFAP299 (255119)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017007978.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000148069 GATAATCCAGAAGGCTTACTT pLKO.1 607 CDS 100% 5.625 7.875 N CFAP299 n/a
2 TRCN0000128396 GCAAGAGATATCAGGATACAT pLKO.1 435 CDS 100% 5.625 7.875 N CFAP299 n/a
3 TRCN0000425098 ACTTAAGTACCAACATGTTAA pLKO_005 763 CDS 100% 13.200 9.240 N CFAP299 n/a
4 TRCN0000434514 TGGTAAAGACCTACAAGATAA pLKO_005 324 CDS 100% 13.200 9.240 N CFAP299 n/a
5 TRCN0000420189 GACTATGCCCACAGGCTAAAG pLKO_005 457 CDS 100% 10.800 7.560 N CFAP299 n/a
6 TRCN0000148180 GCAATGAGAGAAGAAGACAAT pLKO.1 361 CDS 100% 4.950 3.465 N CFAP299 n/a
7 TRCN0000146541 GCTGGTAAAGACCTACAAGAT pLKO.1 322 CDS 100% 4.950 3.465 N CFAP299 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017007978.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.