Transcript: Human XM_017009644.2

PREDICTED: Homo sapiens ANKH inorganic pyrophosphate transport regulator (ANKH), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANKH (56172)
Length:
2860
CDS:
16..1410

Additional Resources:

NCBI RefSeq record:
XM_017009644.2
NBCI Gene record:
ANKH (56172)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017009644.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000059323 CGGCCTATTGTCAACCTCTTT pLKO.1 694 CDS 100% 4.950 6.930 N ANKH n/a
2 TRCN0000422372 GGTGGCCTTTGGCTCTAATTC pLKO_005 653 CDS 100% 13.200 10.560 N ANKH n/a
3 TRCN0000422508 CAGTCACATGGCCGTACAAAG pLKO_005 1864 3UTR 100% 10.800 8.640 N ANKH n/a
4 TRCN0000436436 CCTCAATCTCAGATGTCATAG pLKO_005 422 CDS 100% 10.800 8.640 N ANKH n/a
5 TRCN0000418913 GGACCTAGTGAATGGTCTTTA pLKO_005 1593 3UTR 100% 13.200 9.240 N ANKH n/a
6 TRCN0000059326 ACGCTCTGTTTCGTGATGTTT pLKO.1 940 CDS 100% 5.625 3.938 N ANKH n/a
7 TRCN0000059327 CACTGATAGCTTATAGTGATT pLKO.1 236 CDS 100% 4.950 3.465 N ANKH n/a
8 TRCN0000059324 CCTGGGCTACTACAAGAACAT pLKO.1 558 CDS 100% 4.950 3.465 N ANKH n/a
9 TRCN0000098166 GCCTCAATCTCAGATGTCATA pLKO.1 421 CDS 100% 4.950 3.465 N Ank n/a
10 TRCN0000316428 GCCTCAATCTCAGATGTCATA pLKO_005 421 CDS 100% 4.950 3.465 N Ank n/a
11 TRCN0000059325 CTTTCCTTTCATGGACGCAAT pLKO.1 342 CDS 100% 4.050 2.835 N ANKH n/a
12 TRCN0000417047 CCCATGCTGGCATTCTCTTAA pLKO_005 371 CDS 100% 13.200 7.920 N ANKH n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017009644.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.