Transcript: Human XM_017010592.2

PREDICTED: Homo sapiens TGF-beta activated kinase 1 (MAP3K7) binding protein 2 (TAB2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TAB2 (23118)
Length:
4898
CDS:
929..3010

Additional Resources:

NCBI RefSeq record:
XM_017010592.2
NBCI Gene record:
TAB2 (23118)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017010592.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000342402 AGTCAACCTAAGGTCTATATT pLKO_005 2075 CDS 100% 15.000 21.000 N TAB2 n/a
2 TRCN0000313295 TTCTGCCCATAGCCAATATAA pLKO_005 1846 CDS 100% 15.000 21.000 N Tab2 n/a
3 TRCN0000378661 TTCTGCCCATAGCCAATATAA pLKO_005 1846 CDS 100% 15.000 21.000 N TAB2 n/a
4 TRCN0000352680 AGTCGAGCAATAGGCAATAAC pLKO_005 2246 CDS 100% 13.200 18.480 N TAB2 n/a
5 TRCN0000352679 ATATCCAGACTGGTCGTAATA pLKO_005 1479 CDS 100% 13.200 10.560 N TAB2 n/a
6 TRCN0000004454 GCATCTAATCCTCTGTCACAT pLKO.1 1709 CDS 100% 4.950 3.960 N TAB2 n/a
7 TRCN0000378442 CACTCAGCCCAATACGAAATA pLKO_005 2293 CDS 100% 13.200 9.240 N TAB2 n/a
8 TRCN0000004456 TGGCCCTGTATCTTCTCTAAA pLKO.1 3017 3UTR 100% 13.200 9.240 N TAB2 n/a
9 TRCN0000004452 AGATTGACATTGACTGCTTAA pLKO.1 2736 CDS 100% 10.800 7.560 N TAB2 n/a
10 TRCN0000352616 AGATTGACATTGACTGCTTAA pLKO_005 2736 CDS 100% 10.800 7.560 N TAB2 n/a
11 TRCN0000004453 CCTGAAGTACCTGAAGTTGTT pLKO.1 989 CDS 100% 4.950 3.465 N TAB2 n/a
12 TRCN0000004455 CCTGCCTTTATTCATCACCAT pLKO.1 2216 CDS 100% 2.640 1.848 N TAB2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017010592.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.