Transcript: Human XM_017010895.1

PREDICTED: Homo sapiens patched domain containing 4 (PTCHD4), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PTCHD4 (442213)
Length:
22455
CDS:
1020..2750

Additional Resources:

NCBI RefSeq record:
XM_017010895.1
NBCI Gene record:
PTCHD4 (442213)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017010895.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000367350 GTGAACCACAAGGGCTATAAT pLKO_005 413 5UTR 100% 15.000 10.500 N Ptchd4 n/a
2 TRCN0000149816 GAAGTGCCAAACAGCAAAGAT pLKO.1 632 5UTR 100% 5.625 3.938 N PTCHD4 n/a
3 TRCN0000129218 CTTCTTCATCACCGATGGAAA pLKO.1 1006 5UTR 100% 4.950 3.465 N PTCHD4 n/a
4 TRCN0000183357 GCCAACATCATCAATCTACTA pLKO.1 1674 CDS 100% 4.950 3.465 N PTCHD4 n/a
5 TRCN0000150149 GAGAATGAGTTCTGTAAGCTT pLKO.1 743 5UTR 100% 3.000 2.100 N PTCHD4 n/a
6 TRCN0000128775 CAGAGCCATTCAAATCACCTA pLKO.1 670 5UTR 100% 2.640 1.848 N PTCHD4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017010895.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.