Transcript: Human XM_017010991.1

PREDICTED: Homo sapiens sine oculis binding protein homolog (SOBP), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SOBP (55084)
Length:
6752
CDS:
1475..3649

Additional Resources:

NCBI RefSeq record:
XM_017010991.1
NBCI Gene record:
SOBP (55084)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017010991.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000417462 ACCCGAGGACAGTGTTATTTC pLKO_005 1288 5UTR 100% 13.200 18.480 N SOBP n/a
2 TRCN0000219768 TCATGGCAGTGTGCCCATTAT pLKO.1 1387 5UTR 100% 13.200 10.560 N SOBP n/a
3 TRCN0000432434 TGGAATATCCCGCTAACAGAT pLKO_005 1925 CDS 100% 4.950 3.960 N SOBP n/a
4 TRCN0000414963 TGGTGTAAGCACATAAGACAC pLKO_005 1706 CDS 100% 4.050 3.240 N SOBP n/a
5 TRCN0000167050 CCTGTCATGGTTAAGAGAAAT pLKO.1 4735 3UTR 100% 13.200 9.240 N SOBP n/a
6 TRCN0000219553 TGCCAAGAGAACTCGGTAAAT pLKO.1 4400 3UTR 100% 13.200 9.240 N Sobp n/a
7 TRCN0000434130 ACAAGGACCAATGTAGGTATT pLKO_005 3962 3UTR 100% 10.800 7.560 N SOBP n/a
8 TRCN0000425181 AGTGGGAATCAAGCGCTATTC pLKO_005 1495 CDS 100% 10.800 7.560 N SOBP n/a
9 TRCN0000428658 CAATATAAGCACAGGCTATTC pLKO_005 1315 5UTR 100% 10.800 7.560 N SOBP n/a
10 TRCN0000172427 CAGTGAGCATGATGCCAAATG pLKO.1 2502 CDS 100% 10.800 7.560 N SOBP n/a
11 TRCN0000172730 GAGGTGCCTCCGAATTAGAAA pLKO.1 3616 CDS 100% 5.625 3.938 N SOBP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017010991.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.