Transcript: Human XM_017012370.1

PREDICTED: Homo sapiens carnitine O-octanoyltransferase (CROT), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CROT (54677)
Length:
3307
CDS:
1151..2158

Additional Resources:

NCBI RefSeq record:
XM_017012370.1
NBCI Gene record:
CROT (54677)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017012370.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000229364 CTTCACCCGGATACGTTTATT pLKO_005 1559 CDS 100% 15.000 21.000 N CROT n/a
2 TRCN0000036013 GCCTATCTGGATGTTCGTATA pLKO.1 448 5UTR 100% 10.800 15.120 N CROT n/a
3 TRCN0000036012 CCGGATACGTTTATTCAGCTT pLKO.1 1565 CDS 100% 2.640 3.696 N CROT n/a
4 TRCN0000229362 AGAGTAGTTTACTGGTATATT pLKO_005 1128 5UTR 100% 15.000 12.000 N CROT n/a
5 TRCN0000229363 ATGTAACACCAGAGGATTATT pLKO_005 1170 CDS 100% 15.000 10.500 N CROT n/a
6 TRCN0000218986 TGAACTACTGGCAGCTATTAA pLKO_005 581 5UTR 100% 15.000 10.500 N CROT n/a
7 TRCN0000229365 TGGTACTTACATGGGTTATAA pLKO_005 2487 3UTR 100% 15.000 10.500 N CROT n/a
8 TRCN0000036011 GCCTGTTCATAAAGTTGGAAA pLKO.1 615 5UTR 100% 4.950 3.465 N CROT n/a
9 TRCN0000036009 CGAGAATATCTGATTGGTCTT pLKO.1 1073 5UTR 100% 4.050 2.835 N CROT n/a
10 TRCN0000036010 CCATCCTTATTGGAGATCCAA pLKO.1 1206 CDS 100% 3.000 2.100 N CROT n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017012370.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.