Transcript: Human XM_017013123.2

PREDICTED: Homo sapiens glutamate rich 1 (ERICH1), transcript variant X11, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ERICH1 (157697)
Length:
1996
CDS:
63..1592

Additional Resources:

NCBI RefSeq record:
XM_017013123.2
NBCI Gene record:
ERICH1 (157697)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017013123.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000172285 CCAGAAACATGCTGAGCCTTT pLKO.1 206 CDS 100% 4.050 5.670 N ERICH1 n/a
2 TRCN0000442020 CACAGATGGCACCACAATAAG pLKO_005 515 CDS 100% 13.200 10.560 N ERICH1 n/a
3 TRCN0000435953 GAGGCTTCAGATGAGAAATTG pLKO_005 1747 3UTR 100% 13.200 9.240 N ERICH1 n/a
4 TRCN0000423111 TTTGAAGTCAACACAGGAAAT pLKO_005 1091 CDS 100% 10.800 7.560 N ERICH1 n/a
5 TRCN0000436624 GATCCTCATGACCAGCCAAAG pLKO_005 372 CDS 100% 6.000 4.200 N ERICH1 n/a
6 TRCN0000168249 CAGAGTCTGTTACAGGAGAAA pLKO.1 480 CDS 100% 4.950 3.465 N ERICH1 n/a
7 TRCN0000414789 GCTGCTGGTGTCAGTTTCATG pLKO_005 609 CDS 100% 4.950 3.465 N ERICH1 n/a
8 TRCN0000440834 TTTGTTCCTGGTGGGCAAGAT pLKO_005 1719 3UTR 100% 4.950 3.465 N ERICH1 n/a
9 TRCN0000418736 CTGTTACAGGAGAAATCTCAG pLKO_005 486 CDS 100% 4.050 2.835 N ERICH1 n/a
10 TRCN0000168642 GACAAATGTGAGATGGGCTTA pLKO.1 1643 3UTR 100% 4.050 2.835 N ERICH1 n/a
11 TRCN0000168841 CTGGAAATGTTCCCAGAACAT pLKO.1 1482 CDS 100% 0.495 0.347 N ERICH1 n/a
12 TRCN0000168790 GAGTTAGTTCTCTGGGAACTT pLKO.1 1664 3UTR 100% 0.495 0.347 N ERICH1 n/a
13 TRCN0000431785 ATTCTGTTTCTCTACTTATTG pLKO_005 1833 3UTR 100% 13.200 7.920 N ERICH1 n/a
14 TRCN0000168162 CCTGCAAGATACTGAGAGATT pLKO.1 1451 CDS 100% 4.950 2.970 N ERICH1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017013123.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.