Transcript: Human XM_017013395.2

PREDICTED: Homo sapiens R-spondin 2 (RSPO2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RSPO2 (340419)
Length:
3141
CDS:
654..1382

Additional Resources:

NCBI RefSeq record:
XM_017013395.2
NBCI Gene record:
RSPO2 (340419)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017013395.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000116556 AGCGAGCTAGTTATGTATCAA pLKO.1 742 CDS 100% 5.625 7.875 N RSPO2 n/a
2 TRCN0000090559 GCGAGCTAGTTATGTATCAAA pLKO.1 743 CDS 100% 5.625 7.875 N Rspo2 n/a
3 TRCN0000116553 CGAGCTAGTTATGTATCAAAT pLKO.1 744 CDS 100% 13.200 17.160 N RSPO2 n/a
4 TRCN0000435381 ATCGCACATGTGGATTTAAAT pLKO_005 1129 CDS 100% 15.000 10.500 N RSPO2 n/a
5 TRCN0000431718 CAGACAGAGCTAACCAATAAA pLKO_005 1363 CDS 100% 15.000 10.500 N RSPO2 n/a
6 TRCN0000414548 GGACGGACTTGTGCCTATTTA pLKO_005 1686 3UTR 100% 15.000 10.500 N RSPO2 n/a
7 TRCN0000421619 GAAACCAGAACACGGCAAATT pLKO_005 1158 CDS 100% 13.200 9.240 N RSPO2 n/a
8 TRCN0000116554 GCAAGGGTTGTTTGTCTTGTT pLKO.1 772 CDS 100% 4.950 3.465 N RSPO2 n/a
9 TRCN0000116552 GCTGAGGATATGCTCTGGAAA pLKO.1 1870 3UTR 100% 4.950 3.465 N RSPO2 n/a
10 TRCN0000116555 CCATTGCTGAATCCAGGAGAT pLKO.1 1216 CDS 100% 4.050 2.835 N RSPO2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017013395.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.