Transcript: Human XM_017013863.1

PREDICTED: Homo sapiens lysine acetyltransferase 6A (KAT6A), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KAT6A (7994)
Length:
9284
CDS:
546..6560

Additional Resources:

NCBI RefSeq record:
XM_017013863.1
NBCI Gene record:
KAT6A (7994)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017013863.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000285167 ATGCCTACTCCCGCCTATAAT pLKO_005 6255 CDS 100% 15.000 21.000 N KAT6A n/a
2 TRCN0000381877 AGTTACGATTGGCTATCAAAC pLKO_005 982 CDS 100% 10.800 15.120 N KAT6A n/a
3 TRCN0000013125 CGGCGCTATACTAATCCAATA pLKO.1 1530 CDS 100% 10.800 15.120 N KAT6A n/a
4 TRCN0000274197 CGGCGCTATACTAATCCAATA pLKO_005 1530 CDS 100% 10.800 15.120 N KAT6A n/a
5 TRCN0000382117 CTACTCAAGCATGCGTCATTG pLKO_005 4093 CDS 100% 10.800 15.120 N KAT6A n/a
6 TRCN0000274245 CCGCTGTCACAGTGTAGTATG pLKO_005 5646 CDS 100% 10.800 8.640 N KAT6A n/a
7 TRCN0000285170 CATACCACATGGACAGAATTT pLKO_005 6868 3UTR 100% 13.200 9.240 N KAT6A n/a
8 TRCN0000013127 CCCACACTAAGGAAGAGTTAA pLKO.1 4744 CDS 100% 13.200 9.240 N KAT6A n/a
9 TRCN0000285168 CTGATGACACTCCTATCTTAA pLKO_005 3892 CDS 100% 13.200 9.240 N KAT6A n/a
10 TRCN0000379939 TGGGAATGTGAGTACCATTTA pLKO_005 2291 CDS 100% 13.200 9.240 N KAT6A n/a
11 TRCN0000013126 CCAGTGTTTCTCTGTCCAATA pLKO.1 5890 CDS 100% 10.800 7.560 N KAT6A n/a
12 TRCN0000013123 GCCTCTTGTTTCTAGTATGTA pLKO.1 7503 3UTR 100% 5.625 3.938 N KAT6A n/a
13 TRCN0000013124 GCCCATCGTTTCCATTCCTAA pLKO.1 4115 CDS 100% 4.950 3.465 N KAT6A n/a
14 TRCN0000166364 CACACACACACACACACACAA pLKO.1 8055 3UTR 100% 4.950 2.475 Y KAAG1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017013863.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.