Transcript: Human XM_017015136.2

PREDICTED: Homo sapiens euchromatic histone lysine methyltransferase 1 (EHMT1), transcript variant X9, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
EHMT1 (79813)
Length:
5000
CDS:
29..3826

Additional Resources:

NCBI RefSeq record:
XM_017015136.2
NBCI Gene record:
EHMT1 (79813)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017015136.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000036055 CCCATGAACATCGACAGAAAT pLKO.1 3074 CDS 100% 13.200 18.480 N EHMT1 n/a
2 TRCN0000036058 CCTCTTTGATCTCGACAATAA pLKO.1 3448 CDS 100% 13.200 18.480 N EHMT1 n/a
3 TRCN0000229327 GTTAGTCTTGTAGCGTGAATA pLKO_005 4725 3UTR 100% 13.200 18.480 N EHMT1 n/a
4 TRCN0000036054 CGAGTCAATAACGCCAGCTAT pLKO.1 1787 CDS 100% 4.950 6.930 N EHMT1 n/a
5 TRCN0000036056 GCAACGGATACATCTTAAATA pLKO.1 393 CDS 100% 15.000 12.000 N EHMT1 n/a
6 TRCN0000218919 ACCTCTTTGATCTCGACAATA pLKO_005 3447 CDS 100% 13.200 10.560 N EHMT1 n/a
7 TRCN0000036057 CCTCGGTTCTGAGTCGTATAA pLKO.1 1294 CDS 100% 13.200 9.240 N EHMT1 n/a
8 TRCN0000229325 CCTCGGTTCTGAGTCGTATAA pLKO_005 1294 CDS 100% 13.200 9.240 N EHMT1 n/a
9 TRCN0000229326 GGATTCAGATGTCACCTTAAA pLKO_005 2812 CDS 100% 13.200 9.240 N EHMT1 n/a
10 TRCN0000217965 TCGAGAAGCTAGAGATCATAA pLKO_005 700 CDS 100% 13.200 9.240 N EHMT1 n/a
11 TRCN0000433423 CAAACAGCGTGGTCAAGTATG pLKO_005 1590 CDS 100% 10.800 7.560 N Ehmt1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017015136.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.