Transcript: Human XM_017019611.2

PREDICTED: Homo sapiens kinesin family member 21A (KIF21A), transcript variant X16, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KIF21A (55605)
Length:
6179
CDS:
178..4983

Additional Resources:

NCBI RefSeq record:
XM_017019611.2
NBCI Gene record:
KIF21A (55605)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017019611.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000083407 CCCAATTCTTAGAGCTCTATA pLKO.1 614 CDS 100% 13.200 18.480 N KIF21A n/a
2 TRCN0000425701 GCTAATGATGCTGCAACATAA pLKO_005 2181 CDS 100% 13.200 18.480 N KIF21A n/a
3 TRCN0000426725 TTGATACCACTCGTGATATTG pLKO_005 656 CDS 100% 13.200 18.480 N KIF21A n/a
4 TRCN0000083405 GCCAACATAATGCAGATGGAA pLKO.1 3160 CDS 100% 3.000 4.200 N KIF21A n/a
5 TRCN0000083406 GCGTGTAAGAATTAAAGCCAT pLKO.1 1482 CDS 100% 2.640 3.696 N KIF21A n/a
6 TRCN0000112898 CCCAGAAAGAGGCTCAAATTA pLKO.1 3305 CDS 100% 15.000 10.500 N Kif21a n/a
7 TRCN0000432371 ACAGCAAGAGCGCCATATTTC pLKO_005 1708 CDS 100% 13.200 9.240 N KIF21A n/a
8 TRCN0000112899 GCCCAGAAAGAGGCTCAAATT pLKO.1 3304 CDS 100% 13.200 7.920 N Kif21a n/a
9 TRCN0000315486 GCCCAGAAAGAGGCTCAAATT pLKO_005 3304 CDS 100% 13.200 7.920 N Kif21a n/a
10 TRCN0000083403 GCTGTGATAATACTCTGTATT pLKO.1 5014 3UTR 100% 13.200 7.920 N KIF21A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017019611.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.