Transcript: Human XM_017021500.1

PREDICTED: Homo sapiens pleckstrin homology, MyTH4 and FERM domain containing H1 (PLEKHH1), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PLEKHH1 (57475)
Length:
6628
CDS:
235..4329

Additional Resources:

NCBI RefSeq record:
XM_017021500.1
NBCI Gene record:
PLEKHH1 (57475)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017021500.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000443523 TACTACTGTGACGGGTCTAAC pLKO_005 4401 3UTR 100% 10.800 15.120 N PLEKHH1 n/a
2 TRCN0000128935 CCAGCTATATGAACCATTGCA pLKO.1 4193 CDS 100% 3.000 4.200 N PLEKHH1 n/a
3 TRCN0000438125 TGAGGGCATCAGTGCTATAAG pLKO_005 4623 3UTR 100% 13.200 10.560 N PLEKHH1 n/a
4 TRCN0000131144 GCGCACATAGAGGAAGTAGAT pLKO.1 2518 CDS 100% 4.950 3.960 N PLEKHH1 n/a
5 TRCN0000418314 CAACGTTGCTGTGAATATTTC pLKO_005 4316 CDS 100% 13.200 9.240 N PLEKHH1 n/a
6 TRCN0000427880 GCTACCTGATTCTAGACATAG pLKO_005 4581 3UTR 100% 10.800 7.560 N PLEKHH1 n/a
7 TRCN0000128266 GATGACTTCATGCTTGTGATT pLKO.1 4075 CDS 100% 4.950 3.465 N PLEKHH1 n/a
8 TRCN0000128267 GCCATCATTTGTTTCCTTCTT pLKO.1 5364 3UTR 100% 4.950 3.465 N PLEKHH1 n/a
9 TRCN0000130159 CCTGCTAAGATTCAAGCTGTT pLKO.1 5204 3UTR 100% 4.050 2.835 N PLEKHH1 n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 4899 3UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 4899 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017021500.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.