Transcript: Human XM_017021542.1

PREDICTED: Homo sapiens ATP binding cassette subfamily D member 4 (ABCD4), transcript variant X21, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ABCD4 (5826)
Length:
1881
CDS:
357..1388

Additional Resources:

NCBI RefSeq record:
XM_017021542.1
NBCI Gene record:
ABCD4 (5826)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017021542.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000059882 CACATGCAGATTCGGGTGAAT pLKO.1 338 5UTR 100% 4.950 6.930 N ABCD4 n/a
2 TRCN0000286572 CACATGCAGATTCGGGTGAAT pLKO_005 338 5UTR 100% 4.950 6.930 N ABCD4 n/a
3 TRCN0000298675 CTTCGGGAGCAGGTGATATAT pLKO_005 975 CDS 100% 15.000 12.000 N Abcd4 n/a
4 TRCN0000298676 CTTCGGGAGCAGGTGATATAT pLKO_005 975 CDS 100% 15.000 12.000 N ABCD4 n/a
5 TRCN0000293961 CTGATTACCTACAAATGATTT pLKO_005 1645 3UTR 100% 13.200 9.240 N ABCD4 n/a
6 TRCN0000059879 CGGCATCAACACCTTTGACTA pLKO.1 383 CDS 100% 4.950 3.465 N ABCD4 n/a
7 TRCN0000286571 CGGCATCAACACCTTTGACTA pLKO_005 383 CDS 100% 4.950 3.465 N ABCD4 n/a
8 TRCN0000059881 CCTTGAGAAGTTTCATTCCTT pLKO.1 1310 CDS 100% 3.000 2.100 N ABCD4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017021542.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.