Transcript: Human XM_017023229.1

PREDICTED: Homo sapiens zinc finger homeobox 3 (ZFHX3), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZFHX3 (463)
Length:
2368
CDS:
477..878

Additional Resources:

NCBI RefSeq record:
XM_017023229.1
NBCI Gene record:
ZFHX3 (463)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017023229.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000163355 GATAGAGAAGCTGAGACACAA pLKO.1 506 CDS 100% 4.950 3.465 N n/a
2 TRCN0000164832 CCGTCTCTTAGACAAGCTGAA pLKO.1 1158 3UTR 100% 4.050 2.835 N n/a
3 TRCN0000163382 GAAGTTAACAAGAGCCAGCAA pLKO.1 528 CDS 100% 2.640 1.848 N n/a
4 TRCN0000161054 GCTAATTCATTTCAGGTGGAT pLKO.1 1118 3UTR 100% 2.640 1.848 N n/a
5 TRCN0000162291 CAAAGAAGTTAACAAGAGCCA pLKO.1 524 CDS 100% 0.660 0.462 N n/a
6 TRCN0000161599 GCTGAGACACAAAGAAGTTAA pLKO.1 515 CDS 100% 13.200 7.920 N n/a
7 TRCN0000163442 GAGAAGCTGAGACACAAAGAA pLKO.1 510 CDS 100% 5.625 3.375 N n/a
8 TRCN0000159608 GAGACACAAAGAAGTTAACAA pLKO.1 518 CDS 100% 5.625 3.375 N n/a
9 TRCN0000166175 CCTGTCAGTTTCCTCCACATT pLKO.1 946 3UTR 100% 4.950 2.970 N n/a
10 TRCN0000163880 CAGCCATTCAGTTAAGTGGAA pLKO.1 854 CDS 100% 2.640 1.584 N n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017023229.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.