Transcript: Human XM_017024555.1

PREDICTED: Homo sapiens acetyl-CoA carboxylase alpha (ACACA), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ACACA (31)
Length:
9622
CDS:
258..7298

Additional Resources:

NCBI RefSeq record:
XM_017024555.1
NBCI Gene record:
ACACA (31)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017024555.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000232456 TACAAGGGATACAGGTATTTA pLKO_005 5490 CDS 100% 15.000 21.000 N ACACA n/a
2 TRCN0000232455 TATGAGGTGGATCGGAGATTT pLKO_005 4281 CDS 100% 13.200 18.480 N ACACA n/a
3 TRCN0000232458 TTGGACGGAGACCGCCATATT pLKO_005 9471 3UTR 100% 13.200 18.480 N ACACA n/a
4 TRCN0000004767 CCAGCACTCTCGATTCATAAT pLKO.1 299 CDS 100% 13.200 10.560 N ACACA n/a
5 TRCN0000029026 CGGACCAATATGGCAATGCTA pLKO.1 1348 CDS 100% 3.000 2.400 N ACACA n/a
6 TRCN0000232457 GAATCCTCATTGGCCTATAAT pLKO_005 5673 CDS 100% 15.000 10.500 N ACACA n/a
7 TRCN0000232454 GTATGTTCGAAGGGCTTATAT pLKO_005 3713 CDS 100% 15.000 10.500 N ACACA n/a
8 TRCN0000029024 GCCTTCCAGATCCTTTCTTTA pLKO.1 2860 CDS 100% 13.200 9.240 N ACACA n/a
9 TRCN0000029025 CGGGAAGTCTTCTTTATGAAT pLKO.1 3129 CDS 100% 5.625 3.938 N ACACA n/a
10 TRCN0000004765 CCCACCAAATTATGACACAAA pLKO.1 9250 3UTR 100% 4.950 3.465 N ACACA n/a
11 TRCN0000029028 CGTCTCTTTATGATGAGGATA pLKO.1 4072 CDS 100% 4.950 3.465 N ACACA n/a
12 TRCN0000004769 CTGCTTCTGTTGGCTCAGATA pLKO.1 409 CDS 100% 4.950 3.465 N ACACA n/a
13 TRCN0000029027 GCAGCTACATTGAACCGGAAA pLKO.1 3102 CDS 100% 4.050 2.835 N ACACA n/a
14 TRCN0000004766 GCTCAGATACACTCTCTGATT pLKO.1 421 CDS 100% 0.495 0.347 N ACACA n/a
15 TRCN0000004768 CTACTCAGACAGTAAGAATTA pLKO.1 205 5UTR 100% 13.200 7.920 N ACACA n/a
16 TRCN0000028934 CCTGTGTGTTTGAGAAGGAAA pLKO.1 2482 CDS 100% 4.950 2.970 N Acaca n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017024555.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.