Transcript: Human XM_017026454.1

PREDICTED: Homo sapiens niban apoptosis regulator 3 (NIBAN3), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NIBAN3 (199786)
Length:
2342
CDS:
79..2187

Additional Resources:

NCBI RefSeq record:
XM_017026454.1
NBCI Gene record:
NIBAN3 (199786)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026454.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000162462 CTAACTGGATATTGGCAGCTT pLKO.1 1900 CDS 100% 2.640 3.696 N NIBAN3 n/a
2 TRCN0000163878 CGCAGGGAGGTTTACTCATTT pLKO.1 1240 CDS 100% 13.200 9.240 N NIBAN3 n/a
3 TRCN0000160277 CAAATCTTAACTTGGTGTCAA pLKO.1 1819 CDS 100% 4.950 3.465 N NIBAN3 n/a
4 TRCN0000164623 CTGAATCCTTGGGAGACCATA pLKO.1 494 CDS 100% 4.950 3.465 N NIBAN3 n/a
5 TRCN0000136546 CAATGATGTATCCTGCACTCT pLKO.1 1659 CDS 100% 2.640 1.848 N NIBAN3 n/a
6 TRCN0000159234 CCAAATCTTAACTTGGTGTCA pLKO.1 1818 CDS 100% 2.640 1.848 N NIBAN3 n/a
7 TRCN0000138534 CGTGTGTTCTTGGTTCAGCTT pLKO.1 1968 CDS 100% 2.640 1.848 N NIBAN3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026454.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.