Transcript: Human XM_017026563.2

PREDICTED: Homo sapiens KN motif and ankyrin repeat domains 3 (KANK3), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KANK3 (256949)
Length:
2924
CDS:
51..2669

Additional Resources:

NCBI RefSeq record:
XM_017026563.2
NBCI Gene record:
KANK3 (256949)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026563.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000438683 TCAACGGAGAGTACGAGAGCT pLKO_005 1621 CDS 100% 2.640 2.112 N KANK3 n/a
2 TRCN0000423043 TGATGTGTGCCAGTGAGTATG pLKO_005 2401 CDS 100% 10.800 7.560 N KANK3 n/a
3 TRCN0000153555 CCTCAAATCCATCATGAAGAA pLKO.1 1535 CDS 100% 4.950 3.465 N KANK3 n/a
4 TRCN0000156778 GAAGGAGAATGCGGTGACAAT pLKO.1 2625 CDS 100% 4.950 3.465 N KANK3 n/a
5 TRCN0000156503 CATGGGTGATGTCAATGCCAA pLKO.1 2255 CDS 100% 2.640 1.848 N KANK3 n/a
6 TRCN0000414539 AGGCTAACACTGGCCGAAGAG pLKO_005 2768 3UTR 100% 1.350 0.945 N KANK3 n/a
7 TRCN0000155863 CTGGACTTCCTCAAGTACATA pLKO.1 339 CDS 100% 5.625 3.375 N KANK3 n/a
8 TRCN0000157972 CAAGTACATAGAGGAGCTGGA pLKO.1 350 CDS 100% 2.160 1.296 N KANK3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026563.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.