Transcript: Human XM_017027686.2

PREDICTED: Homo sapiens COMM domain containing 7 (COMMD7), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
COMMD7 (149951)
Length:
1209
CDS:
65..526

Additional Resources:

NCBI RefSeq record:
XM_017027686.2
NBCI Gene record:
COMMD7 (149951)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017027686.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000140245 GCCCAACACAATTACCCTGTA pLKO.1 702 3UTR 100% 4.050 5.670 N COMMD7 n/a
2 TRCN0000420345 CATTGCCAATCAGTTCTTAAT pLKO_005 1005 3UTR 100% 13.200 9.240 N COMMD7 n/a
3 TRCN0000430325 AGCCTCCTTCTGGTTCCAAAT pLKO_005 284 CDS 100% 10.800 7.560 N COMMD7 n/a
4 TRCN0000143685 GAGGAGAAAGCCACTTACTTT pLKO.1 371 CDS 100% 5.625 3.938 N COMMD7 n/a
5 TRCN0000143970 CAAATGGTGCTTTGAAGAAGA pLKO.1 300 CDS 100% 4.950 3.465 N COMMD7 n/a
6 TRCN0000122491 CAGAACCAGCATGGAGTGTTT pLKO.1 499 CDS 100% 4.950 3.465 N COMMD7 n/a
7 TRCN0000122049 CCCTTCAAAGTTCCAGAGTAA pLKO.1 831 3UTR 100% 4.950 3.465 N COMMD7 n/a
8 TRCN0000145378 GTTGGTGGTTAAGAAAGGAAA pLKO.1 406 CDS 100% 4.950 3.465 N COMMD7 n/a
9 TRCN0000417017 CTACAGCTTCCTGCACGAGAT pLKO_005 469 CDS 100% 4.050 2.835 N COMMD7 n/a
10 TRCN0000145040 GATTTCATAACTCTGGGTCTT pLKO.1 347 CDS 100% 4.050 2.835 N COMMD7 n/a
11 TRCN0000140117 GCGGATTTCATAACTCTGGGT pLKO.1 344 CDS 100% 0.660 0.462 N COMMD7 n/a
12 TRCN0000139009 CCAGGCGGATTTCATAACTCT pLKO.1 340 CDS 100% 3.000 1.800 N COMMD7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017027686.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.