Transcript: Human XM_017028029.2

PREDICTED: Homo sapiens serine/threonine kinase 4 (STK4), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
STK4 (6789)
Length:
5470
CDS:
172..1596

Additional Resources:

NCBI RefSeq record:
XM_017028029.2
NBCI Gene record:
STK4 (6789)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017028029.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000196901 GTTCTGTATCTGATATCATTC pLKO.1 455 CDS 100% 10.800 15.120 N STK4 n/a
2 TRCN0000001624 GCCCTCATGTAGTCAAATATT pLKO.1 377 CDS 100% 15.000 12.000 N STK4 n/a
3 TRCN0000001625 GCCAAGCGGAATACAGTGATA pLKO.1 667 CDS 100% 4.950 3.960 N STK4 n/a
4 TRCN0000279861 GCCAAGCGGAATACAGTGATA pLKO_005 667 CDS 100% 4.950 3.960 N STK4 n/a
5 TRCN0000194840 CCACAACATCTACCAGATATA pLKO.1 3012 3UTR 100% 13.200 9.240 N STK4 n/a
6 TRCN0000001623 CCGGCCAGATTGTTGCTATTA pLKO.1 287 CDS 100% 13.200 9.240 N STK4 n/a
7 TRCN0000279921 CCGGCCAGATTGTTGCTATTA pLKO_005 287 CDS 100% 13.200 9.240 N STK4 n/a
8 TRCN0000195133 CACAGACTTATGGATCGTTAT pLKO.1 417 CDS 100% 10.800 7.560 N STK4 n/a
9 TRCN0000279862 CACAGACTTATGGATCGTTAT pLKO_005 417 CDS 100% 10.800 7.560 N STK4 n/a
10 TRCN0000195454 CCAGAGCTATGGTCAGATAAC pLKO.1 871 CDS 100% 10.800 7.560 N STK4 n/a
11 TRCN0000279919 CCAGAGCTATGGTCAGATAAC pLKO_005 871 CDS 100% 10.800 7.560 N STK4 n/a
12 TRCN0000001626 CTAAGAAGAGACGGCAACAAA pLKO.1 1568 CDS 100% 5.625 3.938 N STK4 n/a
13 TRCN0000196832 GATTCAGGAAATTGGATACAA pLKO.1 717 CDS 100% 5.625 3.938 N STK4 n/a
14 TRCN0000195305 CATCCAATGAGGGCAATCTTC pLKO.1 814 CDS 100% 4.950 3.465 N STK4 n/a
15 TRCN0000001622 AGTTGAGTGATAGCTGGGAAA pLKO.1 1866 3UTR 100% 4.050 2.835 N STK4 n/a
16 TRCN0000195540 CATGACTGATGGAGCCAATAC pLKO.1 1170 CDS 100% 10.800 6.480 N STK4 n/a
17 TRCN0000279918 CATGACTGATGGAGCCAATAC pLKO_005 1170 CDS 100% 10.800 6.480 N STK4 n/a
18 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 4882 3UTR 100% 5.625 2.813 Y KLHL30 n/a
19 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 4882 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017028029.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.