Transcript: Mouse XM_017314597.1

PREDICTED: Mus musculus EF-hand calcium binding domain 5 (Efcab5), transcript variant X7, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Efcab5 (319634)
Length:
8906
CDS:
3941..8512

Additional Resources:

NCBI RefSeq record:
XM_017314597.1
NBCI Gene record:
Efcab5 (319634)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017314597.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000215995 CTTACCTCATGAGATCAAATT pLKO.1 7402 CDS 100% 13.200 18.480 N Efcab5 n/a
2 TRCN0000178650 CCAGCGGAATACGTAATAGAA pLKO.1 8713 3UTR 100% 5.625 7.875 N Efcab5 n/a
3 TRCN0000176710 CGGAATACGTAATAGAATGTA pLKO.1 8717 3UTR 100% 5.625 7.875 N Efcab5 n/a
4 TRCN0000198276 GAATGAGTATAACGGGTCGTT pLKO.1 7291 CDS 100% 2.640 3.696 N Efcab5 n/a
5 TRCN0000216906 GAGCTCGTTACAAGCTATATC pLKO.1 8294 CDS 100% 13.200 10.560 N Efcab5 n/a
6 TRCN0000176517 CATGGATATTAAGAAGCACAT pLKO.1 4957 CDS 100% 4.050 3.240 N Efcab5 n/a
7 TRCN0000178681 CAGACCTACATGCGACTATTA pLKO.1 6366 CDS 100% 13.200 9.240 N Efcab5 n/a
8 TRCN0000178369 GCATGCATTGATGATGACCAT pLKO.1 8681 3UTR 100% 2.640 1.848 N Efcab5 n/a
9 TRCN0000178741 CACACACATACACACACACAA pLKO.1 2696 5UTR 100% 4.950 2.475 Y Cstad n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017314597.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.