Transcript: Mouse XM_017314636.1

PREDICTED: Mus musculus ankyrin-repeat and fibronectin type III domain containing 1 (Ankfn1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ankfn1 (382543)
Length:
8218
CDS:
310..3543

Additional Resources:

NCBI RefSeq record:
XM_017314636.1
NBCI Gene record:
Ankfn1 (382543)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017314636.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000265057 ATAATAGTTACTCCGTCAAAT pLKO_005 3937 3UTR 100% 13.200 18.480 N Ankfn1 n/a
2 TRCN0000251794 CAACTCCTCCTCTACCAATAT pLKO_005 556 CDS 100% 13.200 18.480 N Ankfn1 n/a
3 TRCN0000265055 ACCACTCATGTGTCGAGTTTC pLKO_005 2996 CDS 100% 10.800 15.120 N Ankfn1 n/a
4 TRCN0000265058 ACGAGACCTGGACCTGGTTTA pLKO_005 2835 CDS 100% 10.800 15.120 N Ankfn1 n/a
5 TRCN0000265232 CCGTAGTGACCAGGTACAAAG pLKO_005 995 CDS 100% 10.800 15.120 N Ankfn1 n/a
6 TRCN0000217468 GAGTCTATGTGGAACCCTATT pLKO.1 3374 CDS 100% 10.800 15.120 N Ankfn1 n/a
7 TRCN0000190475 GCCCATCACTAAGCTGATAGA pLKO.1 2616 CDS 100% 4.950 6.930 N n/a
8 TRCN0000265056 CAGCAAGTGCTGGACTTTATT pLKO_005 2509 CDS 100% 15.000 12.000 N Ankfn1 n/a
9 TRCN0000251796 ACTTTACATAGCCACTATATT pLKO_005 1416 CDS 100% 15.000 10.500 N Ankfn1 n/a
10 TRCN0000251795 CTTTACTATGAGCCCATTAAA pLKO_005 1693 CDS 100% 15.000 10.500 N Ankfn1 n/a
11 TRCN0000191086 CCTCACCTATTTCAAAGTATT pLKO.1 3625 3UTR 100% 13.200 9.240 N n/a
12 TRCN0000265059 AGTCTATGTGGAACCCTATTC pLKO_005 3375 CDS 100% 10.800 7.560 N Ankfn1 n/a
13 TRCN0000251793 AGGAGCCTGAAGCACCTATTT pLKO_005 1357 CDS 100% 13.200 7.920 N Ankfn1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017314636.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.