Transcript: Mouse XM_017315200.1

PREDICTED: Mus musculus family with sequence similarity 71, member D (Fam71d), transcript variant X16, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fam71d (70897)
Length:
1996
CDS:
576..1757

Additional Resources:

NCBI RefSeq record:
XM_017315200.1
NBCI Gene record:
Fam71d (70897)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017315200.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000182786 CGTAGGCATCTGTTCTTCCAA pLKO.1 785 CDS 100% 3.000 4.200 N Fam71d n/a
2 TRCN0000215862 CTCTAGAGAACAATCCTTTAT pLKO.1 1794 3UTR 100% 13.200 9.240 N Fam71d n/a
3 TRCN0000216393 GATCACAGATGTTCAAGATAT pLKO.1 1340 CDS 100% 13.200 9.240 N Fam71d n/a
4 TRCN0000423395 ACACACAGATACCCTTGTAAC pLKO_005 1233 CDS 100% 10.800 7.560 N Fam71d n/a
5 TRCN0000215888 CAAAGAAATATGTGATGAAAC pLKO.1 1673 CDS 100% 10.800 7.560 N Fam71d n/a
6 TRCN0000217837 CTGTCACCATGTCAAACATAG pLKO.1 1582 CDS 100% 10.800 7.560 N Fam71d n/a
7 TRCN0000200116 CCTCCTATACTGGAGAGCAAT pLKO.1 702 CDS 100% 4.950 3.465 N Fam71d n/a
8 TRCN0000421196 TGCTAAGAACATGCGTCTCAA pLKO_005 971 CDS 100% 4.950 3.465 N Fam71d n/a
9 TRCN0000181506 GAATAAGCAAGAAGCCCTCTT pLKO.1 608 CDS 100% 4.050 2.835 N Fam71d n/a
10 TRCN0000177287 GCTTGGAAGATATTTGCACAA pLKO.1 1764 3UTR 100% 4.050 2.835 N Fam71d n/a
11 TRCN0000182273 GCATCTGTTCTTCCAATCCCA pLKO.1 790 CDS 100% 0.750 0.525 N Fam71d n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017315200.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.