Transcript: Mouse XM_017315341.1

PREDICTED: Mus musculus bromodomain containing 9 (Brd9), transcript variant X8, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Brd9 (105246)
Length:
3975
CDS:
2246..3418

Additional Resources:

NCBI RefSeq record:
XM_017315341.1
NBCI Gene record:
Brd9 (105246)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017315341.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000225736 GCTCGTCCTACGAAGATTATA pLKO_005 79 5UTR 100% 15.000 21.000 N Brd9 n/a
2 TRCN0000225738 ATAATGCGATGACGTACAATA pLKO_005 2253 CDS 100% 13.200 18.480 N Brd9 n/a
3 TRCN0000225739 CACCGAATGGTGTCCAATAAG pLKO_005 3580 3UTR 100% 13.200 18.480 N Brd9 n/a
4 TRCN0000218974 AGACACCGTGTACTACAAATT pLKO_005 2278 CDS 100% 13.200 10.560 N Brd9 n/a
5 TRCN0000225737 TGGACTTTGGCACGATGAAAG pLKO_005 2170 5UTR 100% 10.800 7.560 N Brd9 n/a
6 TRCN0000127634 CGAGTAGAGAAGTTATCAGCT pLKO.1 2439 CDS 100% 2.640 1.584 N BRD9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017315341.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.