Transcript: Mouse XM_017315933.1

PREDICTED: Mus musculus sorbin and SH3 domain containing 3 (Sorbs3), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Sorbs3 (20410)
Length:
2741
CDS:
267..2039

Additional Resources:

NCBI RefSeq record:
XM_017315933.1
NBCI Gene record:
Sorbs3 (20410)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017315933.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434738 GTCACCTCCGAACCCATATAG pLKO_005 98 5UTR 100% 13.200 18.480 N Sorbs3 n/a
2 TRCN0000112959 CGAACTAGAAACTGGGCATAA pLKO.1 752 CDS 100% 10.800 8.640 N Sorbs3 n/a
3 TRCN0000123146 TGGCTCCAACACCCTTAATTT pLKO.1 162 5UTR 100% 15.000 10.500 N SORBS3 n/a
4 TRCN0000112956 CGAAGAATGTTCCAGCAAATT pLKO.1 426 CDS 100% 13.200 9.240 N Sorbs3 n/a
5 TRCN0000431306 CTTTCTGGGACGTAGAGATTT pLKO_005 1076 CDS 100% 13.200 9.240 N Sorbs3 n/a
6 TRCN0000112958 CCAGCTAATTATGTGGAGGTT pLKO.1 1317 CDS 100% 2.640 1.848 N Sorbs3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017315933.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.