Transcript: Mouse XM_017317126.1

PREDICTED: Mus musculus transmembrane protein 45A2 (Tmem45a2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tmem45a2 (69457)
Length:
1593
CDS:
364..1233

Additional Resources:

NCBI RefSeq record:
XM_017317126.1
NBCI Gene record:
Tmem45a2 (69457)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017317126.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000190806 GCAACACATCATCATGTACGT pLKO.1 681 CDS 100% 2.640 2.112 N Tmem45a2 n/a
2 TRCN0000191035 CAAGATCTTATGTTTCACCAT pLKO.1 726 CDS 100% 2.640 1.848 N Tmem45a2 n/a
3 TRCN0000190904 CACATTCTTCCTGGAGTCTTT pLKO.1 427 CDS 100% 4.950 2.970 N Tmem45a2 n/a
4 TRCN0000201350 GCAAGCTTTATCCATCAGAAA pLKO.1 1160 CDS 100% 4.950 2.970 N Tmem45a2 n/a
5 TRCN0000190753 GCCAGTCTCTTTGATCACATA pLKO.1 756 CDS 100% 4.950 3.465 N Tmem45a2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017317126.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.