Transcript: Mouse XM_017317518.1

PREDICTED: Mus musculus opsin 5 (Opn5), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Opn5 (353344)
Length:
858
CDS:
122..754

Additional Resources:

NCBI RefSeq record:
XM_017317518.1
NBCI Gene record:
Opn5 (353344)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017317518.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000220289 CGCTATCTGAAGATCTGTTAT pLKO.1 512 CDS 100% 13.200 18.480 N Opn5 n/a
2 TRCN0000014412 GCGGATTTAGTGGCTGGCTTT pLKO.1 215 CDS 100% 4.050 5.670 N OPN5 n/a
3 TRCN0000220290 GCGGAAATAATGACTATCAAT pLKO.1 323 CDS 100% 5.625 3.938 N Opn5 n/a
4 TRCN0000026854 GTTCACCATCATCTCTTGCTT pLKO.1 385 CDS 100% 3.000 2.100 N Opn5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017317518.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.