Transcript: Mouse XM_017319173.1

PREDICTED: Mus musculus predicted gene 14391 (Gm14391), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm14391 (665001)
Length:
10014
CDS:
8069..8815

Additional Resources:

NCBI RefSeq record:
XM_017319173.1
NBCI Gene record:
Gm14391 (665001)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017319173.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000148901 CAAGGGAGAAACCCTATGAAT pLKO.1 9298 3UTR 100% 5.625 3.375 N ZNF658B n/a
2 TRCN0000217699 GAGCAACCCTCTGAGTTTATT pLKO.1 8465 CDS 100% 15.000 7.500 Y Gm14296 n/a
3 TRCN0000231380 GAGCAACCCTCTGAGTTTATT pLKO_005 8465 CDS 100% 15.000 7.500 Y 0610010B08Rik n/a
4 TRCN0000256976 GTAGTCAAAGGCATCAAATTA pLKO_005 8517 CDS 100% 15.000 7.500 Y Gm14393 n/a
5 TRCN0000239826 AGAAGGAGTGACCTCCAAATA pLKO_005 8591 CDS 100% 13.200 6.600 Y Gm14393 n/a
6 TRCN0000245314 AGAGCAACCCTCTGAGTTTAT pLKO_005 8464 CDS 100% 13.200 6.600 Y Gm14325 n/a
7 TRCN0000226091 AGCAACCCTCTGAGTTTATTC pLKO_005 8466 CDS 100% 13.200 6.600 Y Gm2004 n/a
8 TRCN0000242349 GAGTGACCTCCAAATACATAA pLKO_005 8596 CDS 100% 13.200 6.600 Y Gm14393 n/a
9 TRCN0000200786 GCACATATAGTTGAGAGAAAT pLKO.1 9118 3UTR 100% 13.200 6.600 Y Gm14296 n/a
10 TRCN0000272213 GGCATCAAATTAAACATAATG pLKO_005 8526 CDS 100% 13.200 6.600 Y Gm14308 n/a
11 TRCN0000231379 TCACAGCTATAGGTTACATTT pLKO_005 8370 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
12 TRCN0000234269 TCACAGCTATAGGTTACATTT pLKO_005 8370 CDS 100% 13.200 6.600 Y 9230108I15Rik n/a
13 TRCN0000239827 TTGTAGTCAAAGGCATCAAAT pLKO_005 8515 CDS 100% 13.200 6.600 Y Gm14393 n/a
14 TRCN0000242348 ACATACAATTGAAGACCATTT pLKO_005 8398 CDS 100% 10.800 5.400 Y Gm14393 n/a
15 TRCN0000239828 ACTGTAACCAATGTGGTAAAG pLKO_005 8562 CDS 100% 10.800 5.400 Y Gm14393 n/a
16 TRCN0000239829 AGGAGAGAAACCCTATGAATG pLKO_005 8629 CDS 100% 10.800 5.400 Y Gm14393 n/a
17 TRCN0000243733 ATAGGAATCTCACAGCTATAG pLKO_005 8178 CDS 100% 10.800 5.400 Y Gm14322 n/a
18 TRCN0000239453 CATACAATTGAAGACCATTTC pLKO_005 8399 CDS 100% 10.800 5.400 Y Gm14288 n/a
19 TRCN0000239455 CTCAGAAGAGTCTCTACAAAG pLKO_005 8139 CDS 100% 10.800 5.400 Y Gm14288 n/a
20 TRCN0000243739 GAATGTAAACAATGTGGTAAA pLKO_005 8729 CDS 100% 10.800 5.400 Y Gm14411 n/a
21 TRCN0000242409 GAATGTAACCAATGTGGTAAA pLKO_005 8896 3UTR 100% 10.800 5.400 Y Gm14418 n/a
22 TRCN0000242350 GACTGTAACCAATGTGGTAAA pLKO_005 8561 CDS 100% 10.800 5.400 Y Gm14393 n/a
23 TRCN0000242347 GAGTTTATTCAATGTGGTAAA pLKO_005 8477 CDS 100% 10.800 5.400 Y Gm14393 n/a
24 TRCN0000239782 TGTGATGCTAGAGACCTATAG pLKO_005 8161 CDS 100% 10.800 5.400 Y Gm6710 n/a
25 TRCN0000190377 CGAACACATACAGGAGAGAAA pLKO.1 8618 CDS 100% 4.950 2.475 Y Gm14296 n/a
26 TRCN0000242406 GAGTCTCTACAAAGGTGTGAT pLKO_005 8146 CDS 100% 4.950 2.475 Y Gm14418 n/a
27 TRCN0000202246 GCGAACACATACAGGAGAGAA pLKO.1 8617 CDS 100% 4.950 2.475 Y Gm14296 n/a
28 TRCN0000243742 CACCTATGATGACGTGCATGT pLKO_005 8263 CDS 100% 4.050 2.025 Y Gm14411 n/a
29 TRCN0000235325 GTGATGCTAGAGACCTATAAG pLKO_005 8162 CDS 100% 13.200 6.600 Y OTTMUSG00000016228 n/a
30 TRCN0000262238 TACAGGAGAGAAACCCTATAA pLKO_005 8626 CDS 100% 13.200 6.600 Y Gm14305 n/a
31 TRCN0000231378 TGTGATGCTAGAGACCTATAA pLKO_005 8161 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
32 TRCN0000284677 ACAATGTGGTAAAGCCTTTAC pLKO_005 8737 CDS 100% 10.800 5.400 Y Gm14410 n/a
33 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 8625 CDS 100% 10.800 5.400 Y Gm14308 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017319173.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.